Massive, searchable rRNA database (especially strong for microbes).Quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools.16S rRNA database and workbench (most recently updated data can be downloaded here).Website with many useful nucleic acid parameters.Extensive database of protein sequence and functional information.Focused on protein crystallization but contains a lot of generally useful information about various reagents with respect to proteins.Technical suppport on protein crystallization by Hampton Research.Consensus structural annotations and 3D models for sequences of model organisms (built upon numerous other useful related resources).Server for the identification of functional regions in proteins.Comprehensive enzyme information system. Enter a protein to search for antibodies and ELISA kits.Sequence reference for a large number of genomes.Saccharomyces genome database (yeast genome).Multi-organismal member of BioCyc collection catalogs entire universe of metabolism.Access to sequence-validated, full-length, protein-coding, mammalian cDNA clones.Genomic database geared towards high-level functions of the biological system.Follow a link to the underlying open-source software source code.Try out the integrated online tools, including DNA sequence editing and annotation (Vector Editor) and auto-aligning sequencing trace files against a template.A site where you can explore the various features of the JBEI Registry software, and even get some work done!.A DNA part, plasmid, microbial strain, and Arabidopsis Seed online repository with physical sample tracking capabilities.Inventory of Composable Elements (ICE) - The public instance of the JBEI Registry.Sister to Ensembl, not limited to Eukaryotes.Parts list for functional elements in the human genome.Comprehensive biochemical pathway and gene function site for E.coli genes and sequences (Entrez data is pulled from here) You can also search for protein sequences/motifs within the E. coli genome browser get sequences, see the position of your gene in the chromosome, see the function of your gene, and other fun stuff. Collection of thousands of pathway/genome databases for many organisms, plus software tools for understanding their data.Computational server for finding/calculating summary data about a wide range of topics, plus useful widgets like reagent tables and gene lookup.Collaborative encyclopedia of biodiversity.The database of biological databases - External link.Hugely extensive collection of resources, databases, and tools related to diverse aspects of bioinformatics and molecular biology, often containing everything one might need.Filtered index of diseases from the CDC database.The database of useful biological numbers.The few items listed here are some of the broadest and most powerful General Search/Reference There are thousands available (see MetaBase). References, texts, and information resources. Additional suggestions for format changes may be executed directly or discussed on the talk page. Please tag any additional categories in this Content with questionable scientificĪll information resources are assumed to be online, but research tools should be tagged with web for online resources, softwareįor downloadable items, and app for items used on phones and tablets. Software, and make sure to help the community by removing links with harmful content. You think that an item has been placed in the wrong category, feel free to move it. Please help keep this page up to date by fixing old or broken links and by deleting listings that no longer work. This allows for quick navigation around the page and the use of the * in Ctrl + F searches to differentiate between Powerful suite of open source bioinformatics tools for performing microbiome analysis from raw sequences. QIIME (Quantitative Insights Into Microbial Ecology) software Use the *link format of the following DNA example: Tools of this type may be tagged with other relevant categories byĪdding a link to another section of the page after the description. Multiple categories, but are only listed once. Note that many of the tools listed may fit into The sub-categories are organized alphabetically by research topic. Keep this page organized by following theįormat and alphabetical organization already in place.Īll of the links below are organized first by whether they are general reference or a more specified research tool. Please help us by adding new digital resources useful to the community here. 4.3 Synthetic Biology - info/links on Synthetic Biology.4.2 Searching the literature - info/links on searching the scientific literature.4.1 Vectors - info/links related to cloning vectors.
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